- Bioinformatics & Genome Analysis - Machine Learning - Bioinformatics & Functional Genomics - Data Science for Bioinformatics - Bioinformatics & Genome Analysis 1.RNASeq_Data_Access_in_R Website · GitHub Download SRA and FastQ files in R 2.NGS_QC_analysis_and_alignment_in_R Website · GitHub Quality control and processing of NGS data 3.Variant_Call_Analysis Website · GitHub Identifying single nucleotide polymorphisms (SNPs) and small insertions and deletion (indels) from next generation sequencing data 4.RNA-Seq_Expression_Analysis Website · GitHub Breaking down the steps of a typical RNA-seq analysis 5.Class_Prediction_Analysis_Gene_Expression_Data_R Website · GitHub Identification of transcript isoforms, gene fusions, and single nucleotide variations 6.RNA-seq_Analysis_DGE-CGE Website · GitHub Differential Gene Expression and Consistent Gene Differential Expression analysis 7.Microarray_Analysis Website · GitHub Study gene expression from Microarrays in R 8.eQTL_Analysis Website · GitHub Identify allelic variants associated with gene expression on the basis that a proportion of transcripts are under genetic control. 9.ChIP-seq_Analysis Website · GitHub ChIP-seq combines chromatin immunoprecipitation (ChIP) with massively parallel DNA sequencing to identify the binding sites of DNA-associated proteins. 10.DNA_Methylation_Analysis Website · GitHub Study of chromosomal patterns of DNA or histone modification by methyl groups. - Machine Learning Machine_Learning_Global_Covid_Dataset Website · GitHub Machine_Learning_Brazil_Covid_Dataset Website · GitHub - Bioinformatics & Functional Genomics 1.DNA_and_RNA_analysis_using_Biomart Website · GitHub Fundamentals of DNA and RNA analysis - Using BioMart 2.DNA_Repeats Website · GitHub 3.Basic_Local_Alignment_Search_Tool Website · GitHub 4.Pairwise_Alignment Website · GitHub Identify regions of similarity that may indicate functional, structural and/or evolutionary relationships between two biological sequences 5.Foensic_Phylogenetic_Analysis_with_SeaView Website · GitHub 6.Phylogenetic_Analysis_with_MEGA Website · GitHub 7.Protein_Analysis_and_proteomics Website · GitHub Analyse proteins using databases such as UniProt, InterPro through the biomaRt package. 8.Protein_Structure_Analysis_and_Modelling Website · GitHub - Data Science for Bioinformatics 1.Object_Oriented_Programming Website · GitHub Introduction to Object-Oriented Programming in R 2.Biopython_and_Python_Markdown Website · GitHub How to use Python Markdown 3.R_markdown Website · GitHub How to use R Markdown 4.Biopython_Sequence_Objects_Part_1 Website · GitHub Biopython Sequence Objects Part 1 with Jupiter Notebook 5.Version_Control Website · GitHub 6.BioPython_Sequence_Objects_Part_2 Website · GitHub BioPython Sequence Objects Part 2 with Jupiter Notebook 7.Biopython_Sequence_Annotation Website · GitHub Biopython Sequence Annotation with Jupiter Notebook 8.Biopython_Sequence_Input-Output Website · GitHub Biopython Sequence Input/Outputwith Jupiter Notebook 9.R_Functions_and_Control_Structures Website · GitHub R Functions and Control Structures 10.Data_Visualisation_in_R Website · GitHub Bioinformatics, data visualisation techniques for analysis of massive amounts of genomics information in R 11.BLAST_and_MSA_in_Biopython Website · GitHub Writing CLI scripts to integrate BLAST searches into your pipelines. 12.Unsupervised_Machine_Learning_in_R Website · GitHub Exploratory Data Analysis and Unsupervised Machine Learning in R 13.Unsupervised_Machine_Learning_in_Python Website · GitHub Unsupervised Machine Learning in Python 14.Supervised_Machine_Learning_in_R Website · GitHub Supervised Machine Learning in R 15.Supervised_Machine_Learning_in_Python Website · GitHub Supervised Machine Learning in Python 16.Operations_on_Genomic_Intervals_and_Genome_Arithmetic Website · GitHub Using the Bioconductor GenomicRanges package in R for operations on genomic intervals and genome arithmetic View full list of repositories
